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CRISPRs: The CRISPR database

From the website This site acts as a gateway to publicly accessible CRISPRs database and software. It enables the easy detection of CRISPRs...

vendredi 16 mars 2012

A database for bacterial group II introns

(from the paper)

The Database for Bacterial Group II Introns provides a catalogue of full-length, non-redundant group II introns present in bacterial DNA sequences in GenBank. The website is divided into three sections. The first section provides general information on group II intron properties, structures and classification. The second and main section lists information for individual introns, including insertion sites, DNA sequences, intron-encoded protein sequences and RNA secondary structure models. The final section provides tools for identification and analysis of intron sequences. These include a step-by-step guide to identify introns in genomic sequences, a local BLAST tool to identify closest intron relatives to a query sequence, and a boundary-finding tool that predicts 5' and 3' intron-exon junctions in an input DNA sequence. Finally, selected intron data can be downloaded in FASTA format.
http://webapps2.ucalgary.ca/~groupii/index.html#

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